[SOLVED] JEMBOSS Bioinformatic Program Failure
Posted: 06 Oct 2020, 03:22
Hello everybody,
I'm an ordinary Windows PC user and I have downloaded a Java version of a bioinformatic program suite called EMBOSS, publicly available at https://www.emboss.sourceforge.net/Jemboss. I've previously installed OpenWebStart in order to locally run the .jar file. Whenever I try to do so, though, a pop up window appears with the text below, I hope you can get a clue at what's going on in my machine.
Thank you,
Leonardo.
Waiting for exception dialog to be closed
Exiting Boot.mainWithReturnCode() with 1
failed to launch
netx: Read Error: Could not read or parse the JNLP file at 'file:/C:/Users/Leonardo/Downloads/jemboss.jar'. (Invalid XML document syntax. (O nome do atributo "zic5k-fktj5" associado a um tipo de elemento "_6j" deve ser seguido do caractere ' = '.))
[Fatal Error] :9:199: O nome do atributo "zic5k-fktj5" associado a um tipo de elemento "_6j" deve ser seguido do caractere ' = '.
Using MalformedXMLParser
Download done. Shutting down executor
Resource is not cacheable: jemboss.jar
Checking download state of jemboss.jar
Download for jemboss.jar has not been started until now
Will check and maybe put into cache: jemboss.jar
Will add resource 'jemboss.jar'
Will add resource at location 'file:/C:/Users/Leonardo/Downloads/jemboss.jar'
JNLP file location: C:\Users\Leonardo\Downloads\jemboss.jar
Proceeding with jnlp
Proxy disabled ( registry value 'ProxyEnable'). Will use direct proxy.
Windows based proxy created
Selected ProxyProvider : OPERATION_SYSTEM
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts exists.
Operating Keystore Unknown
Loading Keystore Unknown
Keystore file c:\program files\openwebstart\jre\lib\security\trusted.clientcerts does not exists.
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.cacerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.cacerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.cacerts exists.
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecacerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecacerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecacerts exists.
Operating Keystore c:\program files\openwebstart\jre\lib\security\cacerts
Loading Keystore c:\program files\openwebstart\jre\lib\security\cacerts
Keystore file c:\program files\openwebstart\jre\lib\security\cacerts exists.
Operating Keystore Unknown
Loading Keystore Unknown
Keystore file c:\program files\openwebstart\jre\lib\security\jssecacerts does not exists.
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.certs
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.certs
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.certs exists.
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecerts exists.
Operating Keystore Unknown
Loading Keystore Unknown
Keystore file c:\program files\openwebstart\jre\lib\security\trusted.certs does not exists.
Operating Keystore Unknown
Loading Keystore Unknown
Keystore file c:\program files\openwebstart\jre\lib\security\trusted.jssecerts does not exists.
Operating Keystore Unknown
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts exists.
Starting security dialog thread
using com.openwebstart.extensionpoint.OwsExtensionPoint extension point
Java Runtime AdoptOpenJDK-1.8.0_252
OS: Windows 10
OpenWebStartLauncher called with args: [-verbose, C:\Users\Leonardo\Downloads\jemboss.jar].
Calling ITW Boot with args [-verbose, C:\Users\Leonardo\Downloads\jemboss.jar].
RelevantJavawsArgs: '[-verbose, C:\Users\Leonardo\Downloads\jemboss.jar]'
Checking if installation time (1601928933548) is after last initial config time (1601929023775)
Setting download indicator to com.openwebstart.download.ApplicationDownloadIndicator@17f6480
Trying to set download indicator
Property 'ows.install4j.propertyUpdate' is unknown.
Loading USER level properties from: file:/C:/Users/Leonardo/.config/icedtea-web/deployment.properties
Property 'ows.install4j.propertyUpdate' is unknown.
Loading USER level properties from: file:/C:/Users/Leonardo/.config/icedtea-web/deployment.properties
Ico provider registered correctly.
Ico provider registered correctly.
Starting OpenWebStart 1.2.1
OWS main args [-verbose, C:\Users\Leonardo\Downloads\jemboss.jar].
init logger factory to net.sourceforge.jnlp.util.logging.OutputControllerLoggerFactory@694f9431
I'm an ordinary Windows PC user and I have downloaded a Java version of a bioinformatic program suite called EMBOSS, publicly available at https://www.emboss.sourceforge.net/Jemboss. I've previously installed OpenWebStart in order to locally run the .jar file. Whenever I try to do so, though, a pop up window appears with the text below, I hope you can get a clue at what's going on in my machine.
Thank you,
Leonardo.
Waiting for exception dialog to be closed
Exiting Boot.mainWithReturnCode() with 1
failed to launch
netx: Read Error: Could not read or parse the JNLP file at 'file:/C:/Users/Leonardo/Downloads/jemboss.jar'. (Invalid XML document syntax. (O nome do atributo "zic5k-fktj5" associado a um tipo de elemento "_6j" deve ser seguido do caractere ' = '.))
[Fatal Error] :9:199: O nome do atributo "zic5k-fktj5" associado a um tipo de elemento "_6j" deve ser seguido do caractere ' = '.
Using MalformedXMLParser
Download done. Shutting down executor
Resource is not cacheable: jemboss.jar
Checking download state of jemboss.jar
Download for jemboss.jar has not been started until now
Will check and maybe put into cache: jemboss.jar
Will add resource 'jemboss.jar'
Will add resource at location 'file:/C:/Users/Leonardo/Downloads/jemboss.jar'
JNLP file location: C:\Users\Leonardo\Downloads\jemboss.jar
Proceeding with jnlp
Proxy disabled ( registry value 'ProxyEnable'). Will use direct proxy.
Windows based proxy created
Selected ProxyProvider : OPERATION_SYSTEM
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts exists.
Operating Keystore Unknown
Loading Keystore Unknown
Keystore file c:\program files\openwebstart\jre\lib\security\trusted.clientcerts does not exists.
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.cacerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.cacerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.cacerts exists.
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecacerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecacerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecacerts exists.
Operating Keystore c:\program files\openwebstart\jre\lib\security\cacerts
Loading Keystore c:\program files\openwebstart\jre\lib\security\cacerts
Keystore file c:\program files\openwebstart\jre\lib\security\cacerts exists.
Operating Keystore Unknown
Loading Keystore Unknown
Keystore file c:\program files\openwebstart\jre\lib\security\jssecacerts does not exists.
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.certs
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.certs
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.certs exists.
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.jssecerts exists.
Operating Keystore Unknown
Loading Keystore Unknown
Keystore file c:\program files\openwebstart\jre\lib\security\trusted.certs does not exists.
Operating Keystore Unknown
Loading Keystore Unknown
Keystore file c:\program files\openwebstart\jre\lib\security\trusted.jssecerts does not exists.
Operating Keystore Unknown
Operating Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts
Loading Keystore C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts
Keystore file C:\Users\Leonardo\.config\icedtea-web\security\trusted.clientcerts exists.
Starting security dialog thread
using com.openwebstart.extensionpoint.OwsExtensionPoint extension point
Java Runtime AdoptOpenJDK-1.8.0_252
OS: Windows 10
OpenWebStartLauncher called with args: [-verbose, C:\Users\Leonardo\Downloads\jemboss.jar].
Calling ITW Boot with args [-verbose, C:\Users\Leonardo\Downloads\jemboss.jar].
RelevantJavawsArgs: '[-verbose, C:\Users\Leonardo\Downloads\jemboss.jar]'
Checking if installation time (1601928933548) is after last initial config time (1601929023775)
Setting download indicator to com.openwebstart.download.ApplicationDownloadIndicator@17f6480
Trying to set download indicator
Property 'ows.install4j.propertyUpdate' is unknown.
Loading USER level properties from: file:/C:/Users/Leonardo/.config/icedtea-web/deployment.properties
Property 'ows.install4j.propertyUpdate' is unknown.
Loading USER level properties from: file:/C:/Users/Leonardo/.config/icedtea-web/deployment.properties
Ico provider registered correctly.
Ico provider registered correctly.
Starting OpenWebStart 1.2.1
OWS main args [-verbose, C:\Users\Leonardo\Downloads\jemboss.jar].
init logger factory to net.sourceforge.jnlp.util.logging.OutputControllerLoggerFactory@694f9431